J4_3J9Z_009

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

3J9Z|1|LA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9Z_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.127

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

3J9Z|1|LA|C|1833
3J9Z|1|LA|U|1834
3J9Z|1|LA|G|1835
*
3J9Z|1|LA|C|1905
3J9Z|1|LA|G|1906
*
3J9Z|1|LA|C|1924
3J9Z|1|LA|C|1925
3J9Z|1|LA|U|1926
3J9Z|1|LA|A|1927
3J9Z|1|LA|A|1928
3J9Z|1|LA|G|1929
3J9Z|1|LA|G|1930
3J9Z|1|LA|U|1931
3J9Z|1|LA|A|1932
3J9Z|1|LA|G|1933
*
3J9Z|1|LA|C|1967
3J9Z|1|LA|G|1968
3J9Z|1|LA|A|1969
3J9Z|1|LA|A|1970
3J9Z|1|LA|U|1971
3J9Z|1|LA|G|1972

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LN

50S ribosomal protein L2

Chain S6

Transfer RNA; tRNA

Chain SA

Small subunit ribosomal RNA; SSU rRNA