J4_3J9Z_011

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9Z_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1939

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

3J9Z|1|LA|G|2643
3J9Z|1|LA|G|2644
3J9Z|1|LA|G|2645
3J9Z|1|LA|C|2646
*
3J9Z|1|LA|G|2674
3J9Z|1|LA|A|2675
3J9Z|1|LA|C|2676
*
3J9Z|1|LA|G|2731
3J9Z|1|LA|G|2732
3J9Z|1|LA|A|2733
3J9Z|1|LA|A|2734
3J9Z|1|LA|G|2735
*
3J9Z|1|LA|U|2769
3J9Z|1|LA|G|2770
3J9Z|1|LA|C|2771

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LF

50S ribosomal protein L13

Chain LG

50S ribosomal protein L14

Chain LX

50S ribosomal protein L3