J4_3J9Z_014
3D structure
- PDB id
- 3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGUAAUG*UG*CUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 3J9Z|1|SA|U|121
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J9Z_014 not in the Motif Atlas
- Homologous match to J4_4LFB_001
- Geometric discrepancy: 0.2336
- The information below is about J4_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.3
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J9Z|1|SA|G|115
3J9Z|1|SA|A|116
3J9Z|1|SA|G|117
3J9Z|1|SA|U|118
3J9Z|1|SA|A|119
3J9Z|1|SA|A|120
3J9Z|1|SA|U|121
3J9Z|1|SA|G|122
*
3J9Z|1|SA|U|239
3J9Z|1|SA|G|240
*
3J9Z|1|SA|C|286
3J9Z|1|SA|U|287
3J9Z|1|SA|A|288
3J9Z|1|SA|G|289
*
3J9Z|1|SA|C|311
3J9Z|1|SA|C|312
Current chains
- Chain SA
- 16S ribosomal RNA
Nearby chains
- Chain SP
- 30S ribosomal protein S16
- Chain SQ
- 30S ribosomal protein S17
Coloring options: