J4_3J9Z_015
3D structure
- PDB id
- 3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 3J9Z|1|SA|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J9Z_015 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.2372
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
3J9Z|1|SA|G|142
3J9Z|1|SA|A|143
3J9Z|1|SA|G|144
*
3J9Z|1|SA|C|178
3J9Z|1|SA|A|179
3J9Z|1|SA|U|180
3J9Z|1|SA|A|181
3J9Z|1|SA|A|182
3J9Z|1|SA|C|183
3J9Z|1|SA|G|184
*
3J9Z|1|SA|C|193
3J9Z|1|SA|C|194
3J9Z|1|SA|A|195
3J9Z|1|SA|A|196
3J9Z|1|SA|A|197
3J9Z|1|SA|G|198
*
3J9Z|1|SA|U|219
3J9Z|1|SA|G|220
3J9Z|1|SA|C|221
Current chains
- Chain SA
- 16S ribosomal RNA
Nearby chains
- Chain ST
- 30S ribosomal protein S20
Coloring options: