J4_3JA1_006

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

3JA1|1|LA|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JA1_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1767

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3JA1|1|LA|U|1313
3JA1|1|LA|C|1314
*
3JA1|1|LA|G|1338
3JA1|1|LA|G|1339
3JA1|1|LA|U|1340
3JA1|1|LA|G|1341
3JA1|1|LA|A|1342
3JA1|1|LA|G|1343
*
3JA1|1|LA|C|1404
3JA1|1|LA|U|1405
*
3JA1|1|LA|A|1597
3JA1|1|LA|A|1598
3JA1|1|LA|U|1599
3JA1|1|LA|C|1600
3JA1|1|LA|G|1601
3JA1|1|LA|U|1602
3JA1|1|LA|A|1603

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LV

50S ribosomal protein L23