J4_3JA1_012
3D structure
- PDB id
- 3JA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 3JA1|1|S2|U|8, 3JA1|1|S2|U|48, 3JA1|1|S2|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JA1_012 not in the Motif Atlas
- Homologous match to J4_4V9Q_031
- Geometric discrepancy: 0.346
- The information below is about J4_4V9Q_031
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
3JA1|1|S2|G|7
3JA1|1|S2|U|8
3JA1|1|S2|G|9
3JA1|1|S2|G|10
*
3JA1|1|S2|C|26
3JA1|1|S2|G|27
3JA1|1|S2|U|28
*
3JA1|1|S2|A|44
3JA1|1|S2|A|45
3JA1|1|S2|G|46
3JA1|1|S2|A|47
3JA1|1|S2|U|48
3JA1|1|S2|C|49
3JA1|1|S2|G|50
*
3JA1|1|S2|C|66
3JA1|1|S2|C|67
Current chains
- Chain S2
- P/E-tRNA
Nearby chains
- Chain L4
- 50S ribosomal protein L33
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain SA
- Small subunit ribosomal RNA; SSU rRNA
- Chain SM
- 30S ribosomal protein S13
Coloring options: