J4_3JAG_012
3D structure
- PDB id
- 3JAG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 3JAG|1|5|A|4234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JAG_012 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.1925
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3JAG|1|5|C|4231
3JAG|1|5|U|4232
3JAG|1|5|A|4233
3JAG|1|5|A|4234
3JAG|1|5|G|4235
*
3JAG|1|5|U|4289
3JAG|1|5|U|4290
3JAG|1|5|G|4291
3JAG|1|5|A|4292
3JAG|1|5|U|4293
*
3JAG|1|5|A|4317
3JAG|1|5|C|4318
3JAG|1|5|C|4319
*
3JAG|1|5|G|4328
3JAG|1|5|G|4329
3JAG|1|5|G|4330
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain D
- uL18
- Chain T
- eL21
- Chain b
- eL29
- Chain o
- eL42
Coloring options: