3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CAUUAAAUC*GCC*GUGAC*GG
Length
19 nucleotides
Bulged bases
3JAI|1|9|G|407
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_3JAI_014 not in the Motif Atlas
Homologous match to J4_8P9A_021
Geometric discrepancy: 0.1893
The information below is about J4_8P9A_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_15241.1
Basepair signature
cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
Number of instances in this motif group
2

Unit IDs

3JAI|1|9|C|98
3JAI|1|9|A|99
3JAI|1|9|U|100
3JAI|1|9|U|101
3JAI|1|9|A|102
3JAI|1|9|A|103
3JAI|1|9|A|104
3JAI|1|9|U|105
3JAI|1|9|C|106
*
3JAI|1|9|G|355
3JAI|1|9|C|356
3JAI|1|9|C|357
*
3JAI|1|9|G|405
3JAI|1|9|U|406
3JAI|1|9|G|407
3JAI|1|9|A|408
3JAI|1|9|C|409
*
3JAI|1|9|G|431
3JAI|1|9|G|432

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain EE
eS4
Chain II
eS8
Chain LL
uS17
Chain XX
uS12

Coloring options:


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