J4_8P9A_021

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAAC*GG

Length

19 nucleotides

Bulged bases

8P9A|1|sR|A|359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.1

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8P9A|1|sR|C|99
8P9A|1|sR|A|100
8P9A|1|sR|U|101
8P9A|1|sR|U|102
8P9A|1|sR|A|103
8P9A|1|sR|A|104
8P9A|1|sR|A|105
8P9A|1|sR|U|106
8P9A|1|sR|C|107
*
8P9A|1|sR|G|307
8P9A|1|sR|C|308
8P9A|1|sR|C|309
*
8P9A|1|sR|G|357
8P9A|1|sR|U|358
8P9A|1|sR|A|359
8P9A|1|sR|A|360
8P9A|1|sR|C|361
*
8P9A|1|sR|G|383
8P9A|1|sR|G|384

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain d3

40S ribosomal protein S23-A

Chain s4

40S ribosomal protein S4-A

Chain s8

40S ribosomal protein S8-A