Motif J4_15241.2 Version J4_15241.2 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | break | 17 | 18 | 1-2 | 1-18 | 3-18 | 5-14 | 7-11 | 9-10 | 12-13 | 16-17 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_8GLP_015 | 8GLP | 0.1742 | 1 | S2 | SSU rRNA | C | 98 | A2M | 99 | U | 100 | U | 101 | A | 102 | A | 103 | A | 104 | PSU | 105 | C | 106 | * | G | 355 | C | 356 | C | 357 | * | G | 405 | PSU | 406 | A | 408 | C | 409 | * | G | 431 | G | 432 | cSH | cWW | ntHS | tHW | tHW | cWW | cWW | cWW |
| 2 | J4_8CRE_021 | 8CRE | 0.0000 | 1 | CM | SSU rRNA | C | 99 | A | 100 | U | 101 | U | 102 | A | 103 | A | 104 | A | 105 | U | 106 | C | 107 | * | G | 305 | C | 306 | C | 307 | * | G | 355 | U | 356 | A | 358 | C | 359 | * | G | 381 | G | 382 | ncSH | cWW | tHS | tHW | ntHW | cWW | cWW | cWW |
| 3 | J4_8P9A_021 | 8P9A | 0.0606 | 1 | sR | SSU rRNA | C | 99 | A | 100 | U | 101 | U | 102 | A | 103 | A | 104 | A | 105 | U | 106 | C | 107 | * | G | 307 | C | 308 | C | 309 | * | G | 357 | U | 358 | A | 360 | C | 361 | * | G | 383 | G | 384 | cSH | cWW | ntHS | tHW | ntHW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUAAAUC*GCC*GUAAC*GG | 2 |
| C(A2M)UUAAA(PSU)C*GCC*G(PSU)GAC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUAAAU*C*UAA* | 2 |
| (A2M)UUAAA(PSU)*C*(PSU)GA* | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Heat map statistics
- Min 0.06 | Avg 0.09 | Max 0.18
Coloring options: