J4_3JAJ_002
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 3JAJ|1|5|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JAJ_002 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1906
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
3JAJ|1|5|C|111
3JAJ|1|5|C|112
*
3JAJ|1|5|G|278
3JAJ|1|5|A|279
3JAJ|1|5|G|280
3JAJ|1|5|U|281
3JAJ|1|5|C|282
3JAJ|1|5|G|283
*
3JAJ|1|5|C|304
3JAJ|1|5|A|305
3JAJ|1|5|A|306
3JAJ|1|5|A|307
3JAJ|1|5|G|308
3JAJ|1|5|C|309
3JAJ|1|5|G|310
*
3JAJ|1|5|U|327
3JAJ|1|5|A|328
3JAJ|1|5|A|329
3JAJ|1|5|G|330
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain L
- Ribosomal protein eL13
- Chain N
- Ribosomal protein eL15
- Chain h
- Ribosomal protein uL29
- Chain i
- Ribosomal protein eL36
Coloring options: