J4_3JAM_001

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAAC*GG

Length

19 nucleotides

Bulged bases

3JAM|1|2|A|358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JAM_001 not in the Motif Atlas

Homologous match to J4_8P9A_021

Geometric discrepancy: 0.0654

The information below is about J4_8P9A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.1

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW

Number of instances in this motif group

2

Unit IDs

3JAM|1|2|C|99
3JAM|1|2|A|100
3JAM|1|2|U|101
3JAM|1|2|U|102
3JAM|1|2|A|103
3JAM|1|2|A|104
3JAM|1|2|A|105
3JAM|1|2|U|106
3JAM|1|2|C|107
*
3JAM|1|2|G|306
3JAM|1|2|C|307
3JAM|1|2|C|308
*
3JAM|1|2|G|356
3JAM|1|2|U|357
3JAM|1|2|A|358
3JAM|1|2|A|359
3JAM|1|2|C|360
*
3JAM|1|2|G|382
3JAM|1|2|G|383

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain I

eS8

Chain L

uS17

Chain X

uS12