J4_3JAN_007

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

3JAN|1|5|U|4677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|G|4587
3JAN|1|5|U|4588
3JAN|1|5|A|4589
3JAN|1|5|A|4590
*
3JAN|1|5|U|4620
3JAN|1|5|C|4621
*
3JAN|1|5|G|4676
3JAN|1|5|U|4677
3JAN|1|5|G|4678
*
3JAN|1|5|C|4712
3JAN|1|5|G|4713
3JAN|1|5|C|4714
3JAN|1|5|C|4715

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain O

Ribosomal protein uL13

Chain V

Ribosomal protein uL14