J4_3JAP_002

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAAC*GG

Length

19 nucleotides

Bulged bases

3JAP|1|2|A|358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JAP_002 not in the Motif Atlas

Homologous match to J4_8P9A_021

Geometric discrepancy: 0.0946

The information below is about J4_8P9A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.2

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

3

Unit IDs

3JAP|1|2|C|99
3JAP|1|2|A|100
3JAP|1|2|U|101
3JAP|1|2|U|102
3JAP|1|2|A|103
3JAP|1|2|A|104
3JAP|1|2|A|105
3JAP|1|2|U|106
3JAP|1|2|C|107
*
3JAP|1|2|G|306
3JAP|1|2|C|307
3JAP|1|2|C|308
*
3JAP|1|2|G|356
3JAP|1|2|U|357
3JAP|1|2|A|358
3JAP|1|2|A|359
3JAP|1|2|C|360
*
3JAP|1|2|G|382
3JAP|1|2|G|383

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain I

eS8

Chain L

uS17

Chain X

uS12