J4_3JBN_007
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGUUU*AGUUAG*CC*GAGCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 3JBN|1|AA|U|1672
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JBN_007 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.1709
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JBN|1|AA|G|1641
3JBN|1|AA|G|1642
3JBN|1|AA|U|1643
3JBN|1|AA|U|1644
3JBN|1|AA|U|1645
*
3JBN|1|AA|A|1669
3JBN|1|AA|G|1670
3JBN|1|AA|U|1671
3JBN|1|AA|U|1672
3JBN|1|AA|A|1673
3JBN|1|AA|G|1674
*
3JBN|1|AA|C|1757
3JBN|1|AA|C|1758
*
3JBN|1|AA|G|2096
3JBN|1|AA|A|2097
3JBN|1|AA|G|2098
3JBN|1|AA|C|2099
3JBN|1|AA|G|2100
3JBN|1|AA|U|2101
3JBN|1|AA|A|2102
3JBN|1|AA|C|2103
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AY
- 60S ribosomal protein uL23
- Chain Aa
- 60S ribosomal protein eL34
- Chain Ac
- 60S ribosomal protein eL37
- Chain Ad
- 60S ribosomal protein eL38
- Chain Ae
- 60S ribosomal protein eL39
Coloring options: