J4_3JBO_009
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JBO_009 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0982
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
3JBO|1|AA|G|2423
3JBO|1|AA|A|2424
3JBO|1|AA|C|2425
3JBO|1|AA|U|2426
3JBO|1|AA|G|2427
*
3JBO|1|AA|C|2439
3JBO|1|AA|A|2440
3JBO|1|AA|U|2441
3JBO|1|AA|A|2442
3JBO|1|AA|G|2443
*
3JBO|1|AA|U|2479
3JBO|1|AA|G|2480
3JBO|1|AA|A|2481
3JBO|1|AA|U|2482
3JBO|1|AA|U|2483
*
3JBO|1|AA|A|2610
3JBO|1|AA|U|2611
3JBO|1|AA|U|2612
3JBO|1|AA|A|2613
3JBO|1|AA|A|2614
3JBO|1|AA|C|2615
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AD
- 60S ribosomal protein uL2
- Chain Ag
- 60S ribosomal protein eL41
- Chain Ah
- 60S ribosomal protein eL43
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