J4_3JBO_012

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UAA*UC*GUU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JBO_012 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.1961

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3JBO|1|AA|U|3396
3JBO|1|AA|A|3397
3JBO|1|AA|A|3398
*
3JBO|1|AA|U|3428
3JBO|1|AA|C|3429
*
3JBO|1|AA|G|3482
3JBO|1|AA|U|3483
3JBO|1|AA|U|3484
*
3JBO|1|AA|A|3519
3JBO|1|AA|U|3520
3JBO|1|AA|G|3521

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein uL3

Chain AK

60S ribosomal protein uL13

Chain AM

60S ribosomal protein uL14