J4_3JBU_002

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

3JBU|1|b|G|372, 3JBU|1|b|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JBU_002 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2696

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

3JBU|1|b|C|268
3JBU|1|b|C|269
*
3JBU|1|b|G|370
3JBU|1|b|A|371
3JBU|1|b|G|372
3JBU|1|b|U|373
3JBU|1|b|A|374
3JBU|1|b|G|375
*
3JBU|1|b|U|399
3JBU|1|b|G|400
3JBU|1|b|A|401
3JBU|1|b|A|402
3JBU|1|b|U|403
3JBU|1|b|A|404
3JBU|1|b|U|405
3JBU|1|b|G|406
*
3JBU|1|b|C|421
3JBU|1|b|A|422
3JBU|1|b|A|423
3JBU|1|b|G|424

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain h

50S ribosomal protein L9