J4_3JBU_017
3D structure
- PDB id
- 3JBU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.64 Å
Loop
- Sequence
- GUAG*CAC*GGGGUCGGA*UCUC
- Length
- 20 nucleotides
- Bulged bases
- 3JBU|1|v|U|8, 3JBU|1|v|U|47, 3JBU|1|v|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JBU_017 not in the Motif Atlas
- Homologous match to J4_7U2I_014
- Geometric discrepancy: 0.4079
- The information below is about J4_7U2I_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47701.1
- Basepair signature
- cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
3JBU|1|v|G|7
3JBU|1|v|U|8
3JBU|1|v|A|9
3JBU|1|v|G|10
*
3JBU|1|v|C|25
3JBU|1|v|A|26
3JBU|1|v|C|27
*
3JBU|1|v|G|43
3JBU|1|v|G|44
3JBU|1|v|G|45
3JBU|1|v|G|46
3JBU|1|v|U|47
3JBU|1|v|C|48
3JBU|1|v|G|49
3JBU|1|v|G|50
3JBU|1|v|A|51
*
3JBU|1|v|U|63
3JBU|1|v|C|64
3JBU|1|v|U|65
3JBU|1|v|C|66
Current chains
- Chain v
- glycine-tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- 50S ribosomal protein L16
Coloring options: