J4_3JBV_019

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JBV_019 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1559

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

3JBV|1|b|G|2643
3JBV|1|b|G|2644
3JBV|1|b|G|2645
3JBV|1|b|C|2646
*
3JBV|1|b|G|2674
3JBV|1|b|A|2675
3JBV|1|b|C|2676
*
3JBV|1|b|G|2731
3JBV|1|b|G|2732
3JBV|1|b|A|2733
3JBV|1|b|A|2734
3JBV|1|b|G|2735
*
3JBV|1|b|U|2769
3JBV|1|b|G|2770
3JBV|1|b|C|2771

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain d

50S ribosomal protein L11

Chain j

50S ribosomal protein L13

Chain k

50S ribosomal protein L14