J4_3JCE_002
3D structure
- PDB id
- 3JCE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 3JCE|1|8|U|8, 3JCE|1|8|U|47, 3JCE|1|8|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JCE_002 not in the Motif Atlas
- Homologous match to J4_4TUE_004
- Geometric discrepancy: 0.185
- The information below is about J4_4TUE_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
3JCE|1|8|G|7
3JCE|1|8|U|8
3JCE|1|8|G|9
3JCE|1|8|G|10
*
3JCE|1|8|C|25
3JCE|1|8|G|26
3JCE|1|8|U|27
*
3JCE|1|8|A|43
3JCE|1|8|A|44
3JCE|1|8|G|45
3JCE|1|8|G|46
3JCE|1|8|U|47
3JCE|1|8|C|48
3JCE|1|8|G|49
*
3JCE|1|8|C|65
3JCE|1|8|C|66
Current chains
- Chain 8
- tRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
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