3D structure

PDB id
3JCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
3JCE|1|A|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_3JCE_004 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.1023
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

3JCE|1|A|C|268
3JCE|1|A|C|269
*
3JCE|1|A|G|370
3JCE|1|A|A|371
3JCE|1|A|G|372
3JCE|1|A|U|373
3JCE|1|A|A|374
3JCE|1|A|G|375
*
3JCE|1|A|U|399
3JCE|1|A|G|400
3JCE|1|A|A|401
3JCE|1|A|A|402
3JCE|1|A|U|403
3JCE|1|A|A|404
3JCE|1|A|U|405
3JCE|1|A|G|406
*
3JCE|1|A|C|421
3JCE|1|A|A|422
3JCE|1|A|A|423
3JCE|1|A|G|424

Current chains

Chain A
23 ribosomal RNA

Nearby chains

Chain H
50S ribosomal protein L9
Chain X
50S ribosomal protein L28

Coloring options:


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