J4_3JCE_014

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

3JCE|1|a|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JCE_014 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2843

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3JCE|1|a|G|115
3JCE|1|a|A|116
3JCE|1|a|G|117
3JCE|1|a|U|118
3JCE|1|a|A|119
3JCE|1|a|A|120
3JCE|1|a|U|121
3JCE|1|a|G|122
*
3JCE|1|a|U|239
3JCE|1|a|G|240
*
3JCE|1|a|C|286
3JCE|1|a|U|287
3JCE|1|a|A|288
3JCE|1|a|G|289
*
3JCE|1|a|C|311
3JCE|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17