J4_3JCE_015

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

3JCE|1|a|C|183, 3JCE|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JCE_015 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1521

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3JCE|1|a|G|142
3JCE|1|a|A|143
3JCE|1|a|G|144
*
3JCE|1|a|C|178
3JCE|1|a|A|179
3JCE|1|a|U|180
3JCE|1|a|A|181
3JCE|1|a|A|182
3JCE|1|a|C|183
3JCE|1|a|G|184
*
3JCE|1|a|C|193
3JCE|1|a|C|194
3JCE|1|a|A|195
3JCE|1|a|A|196
3JCE|1|a|A|197
3JCE|1|a|G|198
*
3JCE|1|a|U|219
3JCE|1|a|G|220
3JCE|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20