J4_3JCJ_001

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

3JCJ|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JCJ_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.163

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

3JCJ|1|A|C|268
3JCJ|1|A|C|269
*
3JCJ|1|A|G|370
3JCJ|1|A|A|371
3JCJ|1|A|G|372
3JCJ|1|A|U|373
3JCJ|1|A|A|374
3JCJ|1|A|G|375
*
3JCJ|1|A|U|399
3JCJ|1|A|G|400
3JCJ|1|A|A|401
3JCJ|1|A|A|402
3JCJ|1|A|U|403
3JCJ|1|A|A|404
3JCJ|1|A|U|405
3JCJ|1|A|G|406
*
3JCJ|1|A|C|421
3JCJ|1|A|A|422
3JCJ|1|A|A|423
3JCJ|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain W

50S ribosomal protein L28