J4_3JCJ_014
3D structure
- PDB id
- 3JCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 3JCJ|1|v|U|47
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JCJ_014 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.2285
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
3JCJ|1|v|G|7
3JCJ|1|v|4SU|8
3JCJ|1|v|G|9
3JCJ|1|v|G|10
*
3JCJ|1|v|C|25
3JCJ|1|v|G|26
3JCJ|1|v|U|27
*
3JCJ|1|v|A|43
3JCJ|1|v|A|44
3JCJ|1|v|G|45
3JCJ|1|v|A|46
3JCJ|1|v|U|47
3JCJ|1|v|C|48
3JCJ|1|v|G|49
*
3JCJ|1|v|C|65
3JCJ|1|v|C|66
Current chains
- Chain v
- tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L5
- Chain g
- Small subunit ribosomal RNA; SSU rRNA
- Chain s
- 30S ribosomal protein S13
Coloring options: