J4_3JCJ_017

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JCJ_017 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1047

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

3JCJ|1|A|G|2643
3JCJ|1|A|G|2644
3JCJ|1|A|G|2645
3JCJ|1|A|C|2646
*
3JCJ|1|A|G|2674
3JCJ|1|A|A|2675
3JCJ|1|A|C|2676
*
3JCJ|1|A|G|2731
3JCJ|1|A|G|2732
3JCJ|1|A|A|2733
3JCJ|1|A|A|2734
3JCJ|1|A|G|2735
*
3JCJ|1|A|U|2769
3JCJ|1|A|G|2770
3JCJ|1|A|C|2771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain I

50S ribosomal protein L13

Chain J

50S ribosomal protein L14