J4_3JCS_001
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UC*GAGUAG*UCAAGUUG*CAAA
- Length
- 20 nucleotides
- Bulged bases
- 3JCS|1|1|U|336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JCS_001 not in the Motif Atlas
- Homologous match to J4_8C3A_001
- Geometric discrepancy: 0.2428
- The information below is about J4_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCS|1|1|U|112
3JCS|1|1|C|113
*
3JCS|1|1|G|304
3JCS|1|1|A|305
3JCS|1|1|G|306
3JCS|1|1|U|307
3JCS|1|1|A|308
3JCS|1|1|G|309
*
3JCS|1|1|U|330
3JCS|1|1|C|331
3JCS|1|1|A|332
3JCS|1|1|A|333
3JCS|1|1|G|334
3JCS|1|1|U|335
3JCS|1|1|U|336
3JCS|1|1|G|337
*
3JCS|1|1|C|354
3JCS|1|1|A|355
3JCS|1|1|A|356
3JCS|1|1|A|357
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- ribosomal protein L13e
- Chain M
- ribosomal protein L15e
- Chain a
- ribosomal protein L29
- Chain i
- ribosomal protein L36e
Coloring options: