J4_3JCS_005
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AACUG*CAUAG*UGAUU*AUUAAU
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JCS_005 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1045
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
3JCS|1|2|A|376
3JCS|1|2|A|377
3JCS|1|2|C|378
3JCS|1|2|U|379
3JCS|1|2|G|380
*
3JCS|1|2|C|392
3JCS|1|2|A|393
3JCS|1|2|U|394
3JCS|1|2|A|395
3JCS|1|2|G|396
*
3JCS|1|2|U|432
3JCS|1|2|G|433
3JCS|1|2|A|434
3JCS|1|2|U|435
3JCS|1|2|U|436
*
3JCS|1|2|A|563
3JCS|1|2|U|564
3JCS|1|2|U|565
3JCS|1|2|A|566
3JCS|1|2|A|567
3JCS|1|2|U|568
Current chains
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- 26S gamma ribosomal RNA
- Chain A
- ribosomal protein L2
- Chain m
- ribosomal protein L43e
Coloring options: