J4_3OTO_004

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

3OTO|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3OTO_004 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1239

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

3OTO|1|A|G|142
3OTO|1|A|A|143
3OTO|1|A|G|144
*
3OTO|1|A|C|178
3OTO|1|A|A|179
3OTO|1|A|U|180
3OTO|1|A|G|181
3OTO|1|A|U|182
3OTO|1|A|G|183
*
3OTO|1|A|C|194
3OTO|1|A|A|195
3OTO|1|A|A|196
3OTO|1|A|A|197
3OTO|1|A|G|198
*
3OTO|1|A|C|219
3OTO|1|A|G|220
3OTO|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20