J4_3OW2_007

3D structure

PDB id

3OW2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3OW2_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0319

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

3OW2|1|0|G|1828
3OW2|1|0|A|1829
3OW2|1|0|C|1830
3OW2|1|0|U|1831
3OW2|1|0|G|1832
*
3OW2|1|0|C|1844
3OW2|1|0|A|1845
3OW2|1|0|U|1846
3OW2|1|0|A|1847
3OW2|1|0|G|1848
*
3OW2|1|0|U|1883
3OW2|1|0|G|1884
3OW2|1|0|A|1885
3OW2|1|0|A|1886
3OW2|1|0|U|1887
*
3OW2|1|0|A|2015
3OW2|1|0|U|2016
3OW2|1|0|U|2017
3OW2|1|0|A|2018
3OW2|1|0|A|2019
3OW2|1|0|C|2020

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Y

50S ribosomal protein L37Ae