J4_3PIO_006

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3PIO_006 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.0892

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

3PIO|1|X|G|2622
3PIO|1|X|A|2623
3PIO|1|X|G|2624
3PIO|1|X|U|2625
*
3PIO|1|X|A|2653
3PIO|1|X|A|2654
3PIO|1|X|C|2655
*
3PIO|1|X|G|2711
3PIO|1|X|G|2712
3PIO|1|X|A|2713
3PIO|1|X|A|2714
3PIO|1|X|C|2715
3PIO|1|X|G|2716
*
3PIO|1|X|C|2748
3PIO|1|X|A|2749
3PIO|1|X|G|2750
3PIO|1|X|C|2751

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14