J4_3PIP_011

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3PIP_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0976

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3PIP|1|X|G|1763
3PIP|1|X|A|1764
3PIP|1|X|C|1765
3PIP|1|X|U|1766
3PIP|1|X|G|1767
*
3PIP|1|X|C|1779
3PIP|1|X|A|1780
3PIP|1|X|C|1781
3PIP|1|X|A|1782
3PIP|1|X|G|1783
*
3PIP|1|X|U|1819
3PIP|1|X|G|1820
3PIP|1|X|A|1821
3PIP|1|X|C|1822
*
3PIP|1|X|G|1958
3PIP|1|X|U|1959
3PIP|1|X|A|1960
3PIP|1|X|A|1961
3PIP|1|X|C|1962

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2