J4_3T1H_002

3D structure

PDB id

3T1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

3T1H|1|A|A|203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3T1H_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0689

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

3T1H|1|A|G|136
3T1H|1|A|A|137
3T1H|1|A|G|138
*
3T1H|1|A|C|172
3T1H|1|A|A|173
3T1H|1|A|U|174
3T1H|1|A|G|175
3T1H|1|A|U|176
3T1H|1|A|G|177
*
3T1H|1|A|C|200
3T1H|1|A|A|201
3T1H|1|A|A|202
3T1H|1|A|A|203
3T1H|1|A|G|204
*
3T1H|1|A|C|214
3T1H|1|A|G|215
3T1H|1|A|C|216

Current chains

Chain A

16s rRNA

Nearby chains

Chain T

30S ribosomal protein S20