J4_3T1Y_002

3D structure

PDB id

3T1Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3T1Y_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0536

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

3T1Y|1|A|G|136
3T1Y|1|A|A|137
3T1Y|1|A|G|138
*
3T1Y|1|A|C|172
3T1Y|1|A|A|173
3T1Y|1|A|U|174
3T1Y|1|A|G|175
3T1Y|1|A|U|176
3T1Y|1|A|G|177
*
3T1Y|1|A|C|200
3T1Y|1|A|A|201
3T1Y|1|A|A|202
3T1Y|1|A|A|203
3T1Y|1|A|G|204
*
3T1Y|1|A|C|214
3T1Y|1|A|G|215
3T1Y|1|A|C|216

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20