J4_4A2I_001

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4A2I|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4A2I_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.2645

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4A2I|1|A|G|115
4A2I|1|A|A|116
4A2I|1|A|G|117
4A2I|1|A|U|118
4A2I|1|A|A|119
4A2I|1|A|A|120
4A2I|1|A|U|121
4A2I|1|A|G|122
*
4A2I|1|A|U|239
4A2I|1|A|G|240
*
4A2I|1|A|C|286
4A2I|1|A|U|287
4A2I|1|A|A|288
4A2I|1|A|G|289
*
4A2I|1|A|C|311
4A2I|1|A|C|312

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain Q

30S RIBOSOMAL PROTEIN S17