J4_4ADV_001

3D structure

PDB id

4ADV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4ADV|1|A|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4ADV_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.2646

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4ADV|1|A|G|115
4ADV|1|A|A|116
4ADV|1|A|G|117
4ADV|1|A|U|118
4ADV|1|A|A|119
4ADV|1|A|A|120
4ADV|1|A|U|121
4ADV|1|A|G|122
*
4ADV|1|A|U|239
4ADV|1|A|G|240
*
4ADV|1|A|C|286
4ADV|1|A|U|287
4ADV|1|A|A|288
4ADV|1|A|G|289
*
4ADV|1|A|C|311
4ADV|1|A|C|312

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain Q

30S RIBOSOMAL PROTEIN S17