J4_4B3M_002

3D structure

PDB id

4B3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosome in complex with compound 1

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4B3M_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0517

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4B3M|1|A|G|142
4B3M|1|A|A|143
4B3M|1|A|G|144
*
4B3M|1|A|C|178
4B3M|1|A|A|179
4B3M|1|A|U|180
4B3M|1|A|G|181
4B3M|1|A|U|182
4B3M|1|A|G|183
*
4B3M|1|A|C|194
4B3M|1|A|A|195
4B3M|1|A|A|196
4B3M|1|A|A|197
4B3M|1|A|G|198
*
4B3M|1|A|C|219
4B3M|1|A|G|220
4B3M|1|A|C|221

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20