J4_4CSU_001

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4CSU|1|B|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4CSU_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.3322

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4CSU|1|B|C|268
4CSU|1|B|C|269
*
4CSU|1|B|G|370
4CSU|1|B|A|371
4CSU|1|B|G|372
4CSU|1|B|U|373
4CSU|1|B|A|374
4CSU|1|B|G|375
*
4CSU|1|B|U|399
4CSU|1|B|G|400
4CSU|1|B|A|401
4CSU|1|B|A|402
4CSU|1|B|U|403
4CSU|1|B|A|404
4CSU|1|B|U|405
4CSU|1|B|G|406
*
4CSU|1|B|C|421
4CSU|1|B|A|422
4CSU|1|B|A|423
4CSU|1|B|G|424

Current chains

Chain B

23S RRNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L28

Chain H

50S RIBOSOMAL PROTEIN L9