J4_4CUX_002

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

4CUX|1|2|A|623, 4CUX|1|2|A|1026, 4CUX|1|2|U|1029, 4CUX|1|2|U|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4CUX_002 not in the Motif Atlas

Homologous match to J4_9PN5_011

Geometric discrepancy: 0.163

The information below is about J4_9PN5_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.3

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

6

Unit IDs

4CUX|1|2|A|622
4CUX|1|2|A|623
4CUX|1|2|G|624
*
4CUX|1|2|C|975
4CUX|1|2|G|976
4CUX|1|2|A|977
4CUX|1|2|A|978
4CUX|1|2|A|979
4CUX|1|2|G|980
*
4CUX|1|2|C|1021
4CUX|1|2|C|1022
4CUX|1|2|A|1023
4CUX|1|2|U|1024
4CUX|1|2|A|1025
4CUX|1|2|A|1026
4CUX|1|2|A|1027
4CUX|1|2|C|1028
4CUX|1|2|U|1029
4CUX|1|2|A|1030
4CUX|1|2|U|1031
4CUX|1|2|G|1032
*
4CUX|1|2|U|1103
4CUX|1|2|U|1104

Current chains

Chain 2

18S RRNA

Nearby chains