J4_4D67_006

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4D67_006 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.1291

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

4D67|1|2|G|3603
4D67|1|2|A|3604
4D67|1|2|C|3605
4D67|1|2|U|3606
4D67|1|2|G|3607
*
4D67|1|2|C|3619
4D67|1|2|A|3620
4D67|1|2|A|3621
4D67|1|2|A|3622
4D67|1|2|G|3623
*
4D67|1|2|U|3659
4D67|1|2|G|3660
4D67|1|2|A|3661
4D67|1|2|U|3662
4D67|1|2|U|3663
*
4D67|1|2|A|3790
4D67|1|2|U|3791
4D67|1|2|G|3792
4D67|1|2|A|3793
4D67|1|2|A|3794
4D67|1|2|C|3795

Current chains

Chain 2

28S RRNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN L8

Chain n

60S RIBOSOMAL PROTEIN L41

Chain p

60S RIBOSOMAL PROTEIN L37A