J4_4DR1_004

3D structure

PDB id

4DR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the apo 30S ribosomal subunit from Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4DR1_004 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0684

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4DR1|1|A|G|142
4DR1|1|A|A|143
4DR1|1|A|G|144
*
4DR1|1|A|C|178
4DR1|1|A|A|179
4DR1|1|A|U|180
4DR1|1|A|G|181
4DR1|1|A|U|182
4DR1|1|A|G|183
*
4DR1|1|A|C|194
4DR1|1|A|A|195
4DR1|1|A|A|196
4DR1|1|A|A|197
4DR1|1|A|G|198
*
4DR1|1|A|C|219
4DR1|1|A|G|220
4DR1|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20