J4_4DR2_002

3D structure

PDB id

4DR2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with multiple copies of paromomycin molecules bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4DR2_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0529

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4DR2|1|A|G|142
4DR2|1|A|A|143
4DR2|1|A|G|144
*
4DR2|1|A|C|178
4DR2|1|A|A|179
4DR2|1|A|U|180
4DR2|1|A|G|181
4DR2|1|A|U|182
4DR2|1|A|G|183
*
4DR2|1|A|C|194
4DR2|1|A|A|195
4DR2|1|A|A|196
4DR2|1|A|A|197
4DR2|1|A|G|198
*
4DR2|1|A|C|219
4DR2|1|A|G|220
4DR2|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20