J4_4DV0_002

3D structure

PDB id

4DV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4DV0|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4DV0_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1057

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4DV0|1|A|G|142
4DV0|1|A|A|143
4DV0|1|A|G|144
*
4DV0|1|A|C|178
4DV0|1|A|A|179
4DV0|1|A|U|180
4DV0|1|A|G|181
4DV0|1|A|U|182
4DV0|1|A|G|183
*
4DV0|1|A|C|194
4DV0|1|A|A|195
4DV0|1|A|A|196
4DV0|1|A|A|197
4DV0|1|A|G|198
*
4DV0|1|A|C|219
4DV0|1|A|G|220
4DV0|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20