J4_4DV1_002

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4DV1_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1061

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4DV1|1|A|G|142
4DV1|1|A|A|143
4DV1|1|A|G|144
*
4DV1|1|A|C|178
4DV1|1|A|A|179
4DV1|1|A|U|180
4DV1|1|A|G|181
4DV1|1|A|U|182
4DV1|1|A|G|183
*
4DV1|1|A|C|194
4DV1|1|A|A|195
4DV1|1|A|A|196
4DV1|1|A|A|197
4DV1|1|A|G|198
*
4DV1|1|A|C|219
4DV1|1|A|G|220
4DV1|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20