J4_4DV2_004

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4DV2_004 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0945

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4DV2|1|A|G|142
4DV2|1|A|A|143
4DV2|1|A|G|144
*
4DV2|1|A|C|178
4DV2|1|A|A|179
4DV2|1|A|U|180
4DV2|1|A|G|181
4DV2|1|A|U|182
4DV2|1|A|G|183
*
4DV2|1|A|C|194
4DV2|1|A|A|195
4DV2|1|A|A|196
4DV2|1|A|A|197
4DV2|1|A|G|198
*
4DV2|1|A|C|219
4DV2|1|A|G|220
4DV2|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20