J4_4DV4_002

3D structure

PDB id

4DV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4DV4_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0703

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4DV4|1|A|G|142
4DV4|1|A|A|143
4DV4|1|A|G|144
*
4DV4|1|A|C|178
4DV4|1|A|A|179
4DV4|1|A|U|180
4DV4|1|A|G|181
4DV4|1|A|U|182
4DV4|1|A|G|183
*
4DV4|1|A|C|194
4DV4|1|A|A|195
4DV4|1|A|A|196
4DV4|1|A|A|197
4DV4|1|A|G|198
*
4DV4|1|A|C|219
4DV4|1|A|G|220
4DV4|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20