J4_4DV6_002

3D structure

PDB id

4DV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A915G

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4DV6_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0428

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4DV6|1|A|G|142
4DV6|1|A|A|143
4DV6|1|A|G|144
*
4DV6|1|A|C|178
4DV6|1|A|A|179
4DV6|1|A|U|180
4DV6|1|A|G|181
4DV6|1|A|U|182
4DV6|1|A|G|183
*
4DV6|1|A|C|194
4DV6|1|A|A|195
4DV6|1|A|A|196
4DV6|1|A|A|197
4DV6|1|A|G|198
*
4DV6|1|A|C|219
4DV6|1|A|G|220
4DV6|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20