J4_4FRG_002
3D structure
- PDB id
- 4FRG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the cobalamin riboswitch aptamer domain
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGAAAG*CAGA*UAC*GAAUGC
- Length
- 19 nucleotides
- Bulged bases
- 4FRG|1|X|U|71, 4FRG|1|X|G|72
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4FRG_002 not in the Motif Atlas
- Homologous match to J4_4FRG_001
- Geometric discrepancy: 0.0228
- The information below is about J4_4FRG_001
- Detailed Annotation
- Cobalamin riboswitch junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70986.1
- Basepair signature
- cWW-F-F-F-cWW-F-cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4FRG|1|X|G|18
4FRG|1|X|G|19
4FRG|1|X|A|20
4FRG|1|X|A|21
4FRG|1|X|A|22
4FRG|1|X|G|23
*
4FRG|1|X|C|40
4FRG|1|X|A|41
4FRG|1|X|G|42
4FRG|1|X|A|43
*
4FRG|1|X|U|54
4FRG|1|X|A|55
4FRG|1|X|C|56
*
4FRG|1|X|G|68
4FRG|1|X|A|69
4FRG|1|X|A|70
4FRG|1|X|U|71
4FRG|1|X|G|72
4FRG|1|X|C|73
Current chains
- Chain X
- cobalamin riboswitch aptamer domain
Nearby chains
No other chains within 10ÅColoring options: