Motif J4_25222.1 Version J4_25222.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 1-17 | 4-10 | 5-9 | 6-7 | 10-11 | 12-15 | 13-14 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4FRG_001 | 4FRG | 0.0000 | 2 | Cobalamin riboswitch junction | B | Cobalamin riboswitch | G | 18 | G | 19 | A | 20 | A | 21 | A | 22 | G | 23 | * | C | 40 | A | 41 | G | 42 | A | 43 | * | U | 54 | A | 55 | C | 56 | * | G | 68 | A | 69 | A | 70 | C | 73 | cWW | ncsS | ncSs | cWW | cWW | cWw | cWW |
| 2 | J4_4GXY_001 | 4GXY | 0.5524 | 3 | Cobalamin riboswitch junction | A | Cobalamin riboswitch | G | 40 | G | 41 | G | 42 | A | 43 | A | 44 | G | 45 | * | C | 61 | A | 62 | C | 63 | G | 64 | * | C | 72 | A | 73 | C | 74 | * | G | 155 | G | 156 | A | 157 | C | 161 | cWW | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAAG*CAGA*UAC*GAAUGC | 1 |
| GGGAAG*CACG*CAC*GGAAACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA*AG*A*AAUG | 1 |
| GGAA*AC*A*GAAAC | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Cobalamin riboswitch junction (2)
- Basepair signature
- cWW-F-F-F-cWW-F-cWW-F-cWW-cWW-F-F
- Heat map statistics
- Min 0.55 | Avg 0.28 | Max 0.55
Coloring options: